J3_9SRE_019
3D structure
- PDB id
- 9SRE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (PTC conformation with E-site tRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.11 Å
Loop
- Sequence
- CAUC*GUGG*CAUUAAAG
- Length
- 16 nucleotides
- Bulged bases
- 9SRE|1|1|A|2750, 9SRE|1|1|U|2751
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRE_019 not in the Motif Atlas
- Homologous match to J3_4V9F_009
- Geometric discrepancy: 0.0647
- The information below is about J3_4V9F_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_68010.1
- Basepair signature
- cWW-cWH-cWW-cSS-tWH-tSS-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
9SRE|1|1|C|2749
9SRE|1|1|A|2750
9SRE|1|1|U|2751
9SRE|1|1|C|2752
*
9SRE|1|1|G|2777
9SRE|1|1|U|2778
9SRE|1|1|G|2779
9SRE|1|1|G|2780
*
9SRE|1|1|C|2792
9SRE|1|1|A|2793
9SRE|1|1|U|2794
9SRE|1|1|U|2795
9SRE|1|1|A|2796
9SRE|1|1|A|2797
9SRE|1|1|A|2798
9SRE|1|1|G|2799
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BJ
- Large ribosomal subunit protein uL14
Coloring options: