J3_9SRO_024

3D structure

PDB id

9SRO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9SRO|1|a|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SRO_024 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1076

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9SRO|1|a|C|1306
9SRO|1|a|A|1307
9SRO|1|a|A|1308
9SRO|1|a|G|1309
*
9SRO|1|a|C|1605
9SRO|1|a|C|1606
9SRO|1|a|C|1607
9SRO|1|a|A|1608
9SRO|1|a|A|1609
9SRO|1|a|A|1610
9SRO|1|a|C|1611
*
9SRO|1|a|G|1620
9SRO|1|a|U|1621
9SRO|1|a|G|1622

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34