J3_9SRO_029
3D structure
- PDB id
- 9SRO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of SKM-70S ribosomal stalled complex in the rotated state with hybrid tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CUA*UAG*CAUAAG
- Length
- 12 nucleotides
- Bulged bases
- 9SRO|1|a|U|2334, 9SRO|1|a|A|2336
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SRO_029 not in the Motif Atlas
- Geometric match to J3_8B0X_022
- Geometric discrepancy: 0.0829
- The information below is about J3_8B0X_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05327.2
- Basepair signature
- cWW-tWH-tWW-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9SRO|1|a|C|2295
9SRO|1|a|U|2296
9SRO|1|a|A|2297
*
9SRO|1|a|U|2321
9SRO|1|a|A|2322
9SRO|1|a|G|2323
*
9SRO|1|a|C|2332
9SRO|1|a|A|2333
9SRO|1|a|U|2334
9SRO|1|a|A|2335
9SRO|1|a|A|2336
9SRO|1|a|G|2337
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain b
- 5S ribosomal RNA; 5S rRNA
- Chain f
- Large ribosomal subunit protein uL5
- Chain n
- Large ribosomal subunit protein uL18
- Chain v
- Large ribosomal subunit protein bL27
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