J3_9SS0_008
3D structure
- PDB id
- 9SS0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CGUCAG*CGCAACC*GAUGACG
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SS0_008 not in the Motif Atlas
- Homologous match to J3_6CZR_023
- Geometric discrepancy: 0.3533
- The information below is about J3_6CZR_023
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_08394.2
- Basepair signature
- cWW-F-F-F-tHW-F-F-F-tSS-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9SS0|1|D1|C|1063
9SS0|1|D1|G|1064
9SS0|1|D1|U|1065
9SS0|1|D1|C|1066
9SS0|1|D1|A|1067
9SS0|1|D1|G|1068
*
9SS0|1|D1|C|1107
9SS0|1|D1|G|1108
9SS0|1|D1|C|1109
9SS0|1|D1|A|1110
9SS0|1|D1|A|1111
9SS0|1|D1|C|1112
9SS0|1|D1|C|1113
*
9SS0|1|D1|G|1187
9SS0|1|D1|A|1188
9SS0|1|D1|U|1189
9SS0|1|D1|G|1190
9SS0|1|D1|A|1191
9SS0|1|D1|C|1192
9SS0|1|D1|G|1193
Current chains
- Chain D1
- 16S Ribosomal RNA
Nearby chains
- Chain AA
- Small ribosomal subunit protein uS2
- Chain AD
- Small ribosomal subunit protein uS5
- Chain AF
- Small ribosomal subunit protein uS7
- Chain AH
- Small ribosomal subunit protein uS9
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