J3_9SS1_006

3D structure

PDB id

9SS1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State II)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUUG*CGGAG*CGUUAAG

Length

16 nucleotides

Bulged bases

9SS1|1|D1|U|871, 9SS1|1|D1|A|873

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS1_006 not in the Motif Atlas

Homologous match to J3_6CZR_018

Geometric discrepancy: 0.226

The information below is about J3_6CZR_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_85054.3

Basepair signature

cWW-tSH-F-tWW-tHS-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS1|1|D1|C|826
9SS1|1|D1|U|827
9SS1|1|D1|U|828
9SS1|1|D1|G|829
*
9SS1|1|D1|C|857
9SS1|1|D1|G|858
9SS1|1|D1|G|859
9SS1|1|D1|A|860
9SS1|1|D1|G|861
*
9SS1|1|D1|C|868
9SS1|1|D1|G|869
9SS1|1|D1|U|870
9SS1|1|D1|U|871
9SS1|1|D1|A|872
9SS1|1|D1|A|873
9SS1|1|D1|G|874

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AA

Small ribosomal subunit protein uS2

Chain AG

Small ribosomal subunit protein uS8

Chain AT

Small ribosomal subunit protein bS21