J3_9SS4_001

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GCGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS4_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.1154

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9SS4|1|D2|G|30
9SS4|1|D2|C|31
*
9SS4|1|D2|G|474
9SS4|1|D2|C|475
9SS4|1|D2|G|476
9SS4|1|D2|A|477
9SS4|1|D2|A|478
9SS4|1|D2|A|479
9SS4|1|D2|A|480
9SS4|1|D2|G|481
*
9SS4|1|D2|C|509
9SS4|1|D2|C|510

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BT

Large ribosomal subunit protein bL20

Chain BX

Large ribosomal subunit protein uL24