J3_9SS4_004

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9SS4|1|D2|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS4_004 not in the Motif Atlas

Geometric match to J3_8B0X_034

Geometric discrepancy: 0.0655

The information below is about J3_8B0X_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_77124.1

Basepair signature

cWW-tSH-cHH-cSW-F-tHS-cWW-cWW-F-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS4|1|D2|G|297
9SS4|1|D2|G|298
9SS4|1|D2|A|299
9SS4|1|D2|A|300
9SS4|1|D2|G|301
*
9SS4|1|D2|C|316
9SS4|1|D2|G|317
9SS4|1|D2|C|318
9SS4|1|D2|G|319
9SS4|1|D2|A|320
9SS4|1|D2|U|321
9SS4|1|D2|A|322
9SS4|1|D2|C|323
9SS4|1|D2|A|324
9SS4|1|D2|G|325
*
9SS4|1|D2|C|337
9SS4|1|D2|G|338
9SS4|1|D2|U|339
9SS4|1|D2|A|340
9SS4|1|D2|C|341

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BG

Small ribosomal subunit protein bS20

Chain BX

Large ribosomal subunit protein uL24