J3_9SS4_008

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGGAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9SS4|1|D2|A|1302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS4_008 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1747

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9SS4|1|D2|C|1298
9SS4|1|D2|G|1299
9SS4|1|D2|G|1300
9SS4|1|D2|A|1301
9SS4|1|D2|A|1302
9SS4|1|D2|G|1303
*
9SS4|1|D2|C|1625
9SS4|1|D2|A|1626
9SS4|1|D2|G|1627
*
9SS4|1|D2|C|1639
9SS4|1|D2|A|1640
9SS4|1|D2|A|1641
9SS4|1|D2|G|1642

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains