J3_9SS4_011

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS4_011 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0962

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9SS4|1|D2|G|1424
9SS4|1|D2|G|1425
9SS4|1|D2|G|1426
9SS4|1|D2|A|1427
9SS4|1|D2|C|1428
9SS4|1|D2|G|1429
*
9SS4|1|D2|C|1564
9SS4|1|D2|C|1565
*
9SS4|1|D2|G|1568
9SS4|1|D2|A|1569
9SS4|1|D2|A|1570
9SS4|1|D2|A|1571
9SS4|1|D2|A|1572
9SS4|1|D2|G|1573
9SS4|1|D2|C|1574

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BB

Large ribosomal subunit protein uL2