J3_9SS5_010

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAG*CCCAAAC*GUG

Length

14 nucleotides

Bulged bases

9SS5|1|D2|A|1609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_010 not in the Motif Atlas

Homologous match to J3_7A0S_007

Geometric discrepancy: 0.1372

The information below is about J3_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_47341.1

Basepair signature

cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS5|1|D2|C|1306
9SS5|1|D2|A|1307
9SS5|1|D2|A|1308
9SS5|1|D2|G|1309
*
9SS5|1|D2|C|1605
9SS5|1|D2|C|1606
9SS5|1|D2|C|1607
9SS5|1|D2|A|1608
9SS5|1|D2|A|1609
9SS5|1|D2|A|1610
9SS5|1|D2|C|1611
*
9SS5|1|D2|G|1620
9SS5|1|D2|U|1621
9SS5|1|D2|G|1622

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34