J3_9SS5_013

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9SS5|1|D2|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_013 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2089

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9SS5|1|D2|C|2091
9SS5|1|D2|U|2092
9SS5|1|D2|G|2093
*
9SS5|1|D2|C|2196
9SS5|1|D2|U|2197
9SS5|1|D2|A|2198
9SS5|1|D2|A|2199
9SS5|1|D2|C|2200
*
9SS5|1|D2|G|2223
9SS5|1|D2|G|2224
9SS5|1|D2|A|2225
9SS5|1|D2|C|2226
9SS5|1|D2|A|2227
9SS5|1|D2|G|2228

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B1

Large ribosomal subunit protein bL28

Chain BB

Large ribosomal subunit protein uL2

Chain BI

Large ribosomal subunit protein bL9