J3_9SS5_016

3D structure

PDB id

9SS5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit in rimM-KO with RsfS (+H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9SS5|1|D2|A|2518, 9SS5|1|D2|U|2519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS5_016 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1896

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9SS5|1|D2|C|2517
9SS5|1|D2|A|2518
9SS5|1|D2|U|2519
9SS5|1|D2|C|2520
*
9SS5|1|D2|G|2545
9SS5|1|D2|U|2546
9SS5|1|D2|A|2547
*
9SS5|1|D2|U|2561
9SS5|1|D2|U|2562
9SS5|1|D2|U|2563
9SS5|1|D2|A|2564
9SS5|1|D2|A|2565
9SS5|1|D2|A|2566
9SS5|1|D2|G|2567

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L3

Chain BN

Large ribosomal subunit protein uL14