J3_9SS6_025

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGA*UUUAAAG*CAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9SS6_025 not in the Motif Atlas

Homologous match to J3_6PRV_001

Geometric discrepancy: 0.351

The information below is about J3_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_37832.1

Basepair signature

cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F

Number of instances in this motif group

5

Unit IDs

9SS6|1|D2|G|1055
9SS6|1|D2|G|1056
9SS6|1|D2|A|1057
*
9SS6|1|D2|U|1081
9SS6|1|D2|U|1082
9SS6|1|D2|U|1083
9SS6|1|D2|A|1084
9SS6|1|D2|A|1085
9SS6|1|D2|A|1086
9SS6|1|D2|G|1087
*
9SS6|1|D2|C|1102
9SS6|1|D2|A|1103
9SS6|1|D2|C|1104

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BK

50S ribosomal protein L11