J3_9SUM_010

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UU*AGAAG*CAUACGA

Length

14 nucleotides

Bulged bases

9SUM|1|A|A|1012, 9SUM|1|A|U|1041

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_22278.2

Basepair signature

cWW-cWW-cHW-F-cSS-cWW

Number of instances in this motif group

4

Unit IDs

9SUM|1|A|U|933
9SUM|1|A|U|934
*
9SUM|1|A|A|1009
9SUM|1|A|G|1010
9SUM|1|A|A|1011
9SUM|1|A|A|1012
9SUM|1|A|G|1013
*
9SUM|1|A|C|1039
9SUM|1|A|A|1040
9SUM|1|A|U|1041
9SUM|1|A|A|1042
9SUM|1|A|C|1043
9SUM|1|A|G|1044
9SUM|1|A|A|1045

Current chains

Chain A

25S rRNA

Nearby chains

Chain I

60S ribosomal protein L7

Chain V

60S ribosomal protein L21-A

Chain d

60S ribosomal protein L29