J3_9SUM_012
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- GAAA*UGAUAAC*GUC
- Length
- 14 nucleotides
- Bulged bases
- 9SUM|1|A|U|1782, 9SUM|1|A|A|1783
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76012.4
- Basepair signature
- cWW-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 7
Unit IDs
9SUM|1|A|G|1431
9SUM|1|A|A|1432
9SUM|1|A|A|1433
9SUM|1|A|A|1434
*
9SUM|1|A|U|1779
9SUM|1|A|G|1780
9SUM|1|A|A|1781
9SUM|1|A|U|1782
9SUM|1|A|A|1783
9SUM|1|A|A|1784
9SUM|1|A|C|1785
*
9SUM|1|A|G|1794
9SUM|1|A|U|1795
9SUM|1|A|C|1796
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain i
- 60S ribosomal protein L34-B
- Chain l
- Ribosomal protein L37
- Chain n
- Large ribosomal subunit protein eL39
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