J3_9SUM_017

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGACG*UC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.4

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9SUM|1|A|A|1594
9SUM|1|A|G|1595
9SUM|1|A|A|1596
9SUM|1|A|C|1597
9SUM|1|A|G|1598
*
9SUM|1|A|U|1734
9SUM|1|A|C|1735
*
9SUM|1|A|G|1739
9SUM|1|A|A|1740
9SUM|1|A|A|1741
9SUM|1|A|A|1742
9SUM|1|A|A|1743
9SUM|1|A|U|1744

Current chains

Chain A

25S rRNA

Nearby chains

Chain D

60S ribosomal protein L2-A

Chain i

60S ribosomal protein L34-B

Chain r

60S ribosomal protein L43