J3_9SUM_027

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

9SUM|1|CA|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.4

Basepair signature

cWW-cWW-cSW-F-cWW-F-cWS-tHH-tSS-cWW-F-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|A|41
9SUM|1|CA|G|42
9SUM|1|CA|A|43
9SUM|1|CA|U|44
9SUM|1|CA|U|45
9SUM|1|CA|A|46
9SUM|1|CA|A|47
9SUM|1|CA|G|48
*
9SUM|1|CA|C|420
9SUM|1|CA|G|421
9SUM|1|CA|C|422
9SUM|1|CA|G|423
9SUM|1|CA|C|424
9SUM|1|CA|A|425
9SUM|1|CA|A|426
9SUM|1|CA|A|427
9SUM|1|CA|U|428
*
9SUM|1|CA|A|453
9SUM|1|CA|G|454
9SUM|1|CA|U|455

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZB

40S ribosomal protein S9-A

Chain ZP

40S ribosomal protein S23