J3_9SUM_028

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

UGA*UAAUAG*CAUUA

Length

14 nucleotides

Bulged bases

9SUM|1|CA|U|834

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17385.8

Basepair signature

cWW-F-cWW-cWW-tHW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

9SUM|1|CA|U|622
9SUM|1|CA|G|623
9SUM|1|CA|A|624
*
9SUM|1|CA|U|831
9SUM|1|CA|A|832
9SUM|1|CA|A|833
9SUM|1|CA|U|834
9SUM|1|CA|A|835
9SUM|1|CA|G|836
*
9SUM|1|CA|C|932
9SUM|1|CA|A|933
9SUM|1|CA|U|934
9SUM|1|CA|U|935
9SUM|1|CA|A|936

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZD

40S ribosomal protein S11-A

Chain ZE

40S ribosomal protein S13

Chain ZO

40S ribosomal protein S22

Chain ZP

40S ribosomal protein S23

Chain ZT

40S ribosomal protein S27

Chain z

40S ribosomal protein eS7 (formerly S7)