J3_9SUM_030

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

AUCAG*CUAACUACUG*CAUUU

Length

20 nucleotides

Bulged bases

9SUM|1|CA|C|904

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_92123.1

Basepair signature

cWW-cWW-cWW-F-tWW-cWW-cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

9SUM|1|CA|A|851
9SUM|1|CA|U|852
9SUM|1|CA|C|853
9SUM|1|CA|A|854
9SUM|1|CA|G|855
*
9SUM|1|CA|C|897
9SUM|1|CA|U|898
9SUM|1|CA|A|899
9SUM|1|CA|A|900
9SUM|1|CA|C|901
9SUM|1|CA|U|902
9SUM|1|CA|A|903
9SUM|1|CA|C|904
9SUM|1|CA|U|905
9SUM|1|CA|G|906
*
9SUM|1|CA|C|913
9SUM|1|CA|A|914
9SUM|1|CA|U|915
9SUM|1|CA|U|916
9SUM|1|CA|U|917

Current chains

Chain CA

18S rRNA

Nearby chains

Chain ZE

40S ribosomal protein S13

Chain ZF

Small ribosomal subunit protein uS11

Chain ZS

40S ribosomal protein S26

Chain r

60S ribosomal protein L43

Chain t

Small ribosomal subunit protein eS1