J3_9SUM_031
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 9SUM|1|CA|A|1063
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_41498.1
- Basepair signature
- cWW-tWW-cWW-tWW-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
9SUM|1|CA|C|1007
9SUM|1|CA|U|1008
9SUM|1|CA|A|1009
*
9SUM|1|CA|U|1049
9SUM|1|CA|U|1050
9SUM|1|CA|A|1051
9SUM|1|CA|C|1052
9SUM|1|CA|G|1053
*
9SUM|1|CA|C|1060
9SUM|1|CA|A|1061
9SUM|1|CA|A|1062
9SUM|1|CA|A|1063
9SUM|1|CA|G|1064
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain ZM
- 40S ribosomal protein S21
- Chain ZO
- 40S ribosomal protein S22
- Chain ZP
- 40S ribosomal protein S23
- Chain ZS
- 40S ribosomal protein S26
- Chain ZT
- 40S ribosomal protein S27
- Chain s
- Small ribosomal subunit protein uS2
- Chain u
- Rps21 ribosomal protein
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