J3_9SUM_036
3D structure
- PDB id
- 9SUM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.99 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- 9SUM|1|CA|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_05084.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
9SUM|1|CA|U|1252
9SUM|1|CA|U|1253
9SUM|1|CA|C|1254
9SUM|1|CA|U|1255
9SUM|1|CA|U|1256
9SUM|1|CA|A|1257
9SUM|1|CA|G|1258
*
9SUM|1|CA|C|1297
9SUM|1|CA|G|1298
9SUM|1|CA|A|1299
9SUM|1|CA|G|1300
9SUM|1|CA|A|1301
9SUM|1|CA|C|1302
*
9SUM|1|CA|G|1395
9SUM|1|CA|C|1396
9SUM|1|CA|A|1397
9SUM|1|CA|A|1398
9SUM|1|CA|U|1399
9SUM|1|CA|A|1400
9SUM|1|CA|A|1401
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain ZH
- Small ribosomal subunit protein uS9
- Chain ZI
- 40S ribosomal protein S17-B
- Chain ZL
- Small ribosomal subunit protein uS10
- Chain ZV
- Small ribosomal subunit protein uS14
- Chain u
- Rps21 ribosomal protein
- Chain v
- Small ribosomal subunit protein uS3
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