Motif J3_05084.1 Version J3_05084.1 of this group appears in releases 4.14 to 4.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | break | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 1-20 | 2-19 | 7-8 | 13-14 | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | J3_8CRE_082 | 8CRE | 0.0000 | 0 | CM | SSU rRNA | U | 1267 | U | 1268 | C | 1269 | U | 1270 | U | 1271 | A | 1272 | G | 1273 | * | C | 1312 | G | 1313 | A | 1314 | G | 1315 | A | 1316 | C | 1317 | * | G | 1405 | C | 1406 | A | 1407 | A | 1408 | U | 1409 | A | 1410 | A | 1411 | cWW | cWW | cWW | |
| 2 | J3_9SUM_036 | 9SUM | 0.4298 | 0 | CA | SSU rRNA | U | 1252 | U | 1253 | C | 1254 | U | 1255 | U | 1256 | A | 1257 | G | 1258 | * | C | 1297 | G | 1298 | A | 1299 | G | 1300 | A | 1301 | C | 1302 | * | G | 1395 | C | 1396 | A | 1397 | A | 1398 | U | 1399 | A | 1400 | A | 1401 | cWW | ncHW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUCUUAG*CGAGAC*GCAAUAA | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCUUA*GAGA*CAAUA | 2 |
Release history
| Release | 4.14 |
|---|---|
| Date | 2026-09-09 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Heat map statistics
- Min 0.43 | Avg 0.21 | Max 0.43
Coloring options: