J3_9SYR_010

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9SYR|1|L1|U|2788, 9SYR|1|L1|A|2789, 9SYR|1|L1|U|2790

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|G|2402
9SYR|1|L1|A|2403
9SYR|1|L1|A|2404
9SYR|1|L1|G|2405
*
9SYR|1|L1|C|2785
9SYR|1|L1|C|2786
9SYR|1|L1|A2M|2787
9SYR|1|L1|U|2788
9SYR|1|L1|A|2789
9SYR|1|L1|U|2790
9SYR|1|L1|C|2791
*
9SYR|1|L1|G|2800
9SYR|1|L1|U|2801
9SYR|1|L1|C|2802

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LA

Large ribosomal subunit protein eL37

Chain LC

60S ribosomal protein L39

Chain Lx

60S ribosomal protein L34