J3_9SYR_018

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CUC*GAG*CAAAAG

Length

12 nucleotides

Bulged bases

9SYR|1|L1|A|4280, 9SYR|1|L1|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|C|4241
9SYR|1|L1|U|4242
9SYR|1|L1|C|4243
*
9SYR|1|L1|G|4267
9SYR|1|L1|A|4268
9SYR|1|L1|G|4269
*
9SYR|1|L1|C|4278
9SYR|1|L1|A|4279
9SYR|1|L1|A|4280
9SYR|1|L1|A|4281
9SYR|1|L1|A|4282
9SYR|1|L1|G|4283

Current chains

Chain L1

28S rRNA

Nearby chains

Chain L2

5S ribosomal RNA; 5S rRNA

Chain LO

60S ribosomal protein L11

Chain Ld

60S ribosomal protein L5

Chain Lk

60S ribosomal protein L21

Chain S3

Transfer RNA; tRNA