J3_9SYR_020

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9SYR|1|L1|U|4882, 9SYR|1|L1|A|4938, 9SYR|1|L1|C|4940, 9SYR|1|L1|A|4943, 9SYR|1|L1|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|L1|G|4751
9SYR|1|L1|U|4752
9SYR|1|L1|U|4753
9SYR|1|L1|G|4754
*
9SYR|1|L1|C|4879
9SYR|1|L1|C|4880
9SYR|1|L1|U|4881
9SYR|1|L1|U|4882
9SYR|1|L1|C|4883
*
9SYR|1|L1|G|4936
9SYR|1|L1|C|4937
9SYR|1|L1|A|4938
9SYR|1|L1|C|4939
9SYR|1|L1|C|4940
9SYR|1|L1|G|4941
9SYR|1|L1|C|4942
9SYR|1|L1|A|4943
9SYR|1|L1|C|4944
9SYR|1|L1|G|4945
9SYR|1|L1|U|4946
9SYR|1|L1|U|4947
9SYR|1|L1|C|4948

Current chains

Chain L1

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L14

Chain Le

Large ribosomal subunit protein eL6

Chain Lf

Large ribosomal subunit protein uL13

Chain Lw

60S ribosomal protein L35a