J3_9SYR_028
3D structure
- PDB id
- 9SYR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.55 Å
Loop
- Sequence
- AUUC*GGACCAGAG*CAUU(PSU)
- Length
- 18 nucleotides
- Bulged bases
- 9SYR|1|S1|G|991
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9SYR_028 not in the Motif Atlas
- Homologous match to J3_9H3G_033
- Geometric discrepancy: 0.0938
- The information below is about J3_9H3G_033
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23895.2
- Basepair signature
- cWW-cWW-cWW-cWW-tWW-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9SYR|1|S1|A|938
9SYR|1|S1|U|939
9SYR|1|S1|U|940
9SYR|1|S1|C|941
*
9SYR|1|S1|G|985
9SYR|1|S1|G|986
9SYR|1|S1|A|987
9SYR|1|S1|C|988
9SYR|1|S1|C|989
9SYR|1|S1|A|990
9SYR|1|S1|G|991
9SYR|1|S1|A|992
9SYR|1|S1|G|993
*
9SYR|1|S1|C|1000
9SYR|1|S1|A|1001
9SYR|1|S1|U|1002
9SYR|1|S1|U|1003
9SYR|1|S1|PSU|1004
Current chains
- Chain S1
- 18S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L37a
- Chain SF
- 40S ribosomal protein S13
- Chain SG
- 40S ribosomal protein S14
- Chain Sb
- 40S ribosomal protein S17
- Chain Sj
- 40S ribosomal protein S26
- Chain Su
- 40S ribosomal protein S3a
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