J3_9SYR_030

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CCAG*CCAGUAA*UGAUU(A2M)AG

Length

19 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|1218
9SYR|1|S1|C|1219
9SYR|1|S1|A|1220
9SYR|1|S1|G|1221
*
9SYR|1|S1|C|1645
9SYR|1|S1|C|1646
9SYR|1|S1|A|1647
9SYR|1|S1|G|1648
9SYR|1|S1|U|1649
9SYR|1|S1|A|1650
9SYR|1|S1|A|1651
*
9SYR|1|S1|U|1673
9SYR|1|S1|G|1674
9SYR|1|S1|A|1675
9SYR|1|S1|U|1676
9SYR|1|S1|U|1677
9SYR|1|S1|A2M|1678
9SYR|1|S1|A|1679
9SYR|1|S1|G|1680

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S5

Chain Sc

40S ribosomal protein S16

Chain So

40S ribosomal protein S28