J3_9SYR_037

3D structure

PDB id

9SYR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatD

Experimental method

ELECTRON MICROSCOPY

Resolution

3.55 Å

Loop

Sequence

CACUG*CGUGAUGG*CGAG

Length

17 nucleotides

Bulged bases

9SYR|1|S1|U|1535, 9SYR|1|S1|G|1603

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9SYR|1|S1|C|1532
9SYR|1|S1|A|1533
9SYR|1|S1|C|1534
9SYR|1|S1|U|1535
9SYR|1|S1|G|1536
*
9SYR|1|S1|C|1597
9SYR|1|S1|G|1598
9SYR|1|S1|U|1599
9SYR|1|S1|G|1600
9SYR|1|S1|A|1601
9SYR|1|S1|U|1602
9SYR|1|S1|G|1603
9SYR|1|S1|G|1604
*
9SYR|1|S1|C|1635
9SYR|1|S1|G|1636
9SYR|1|S1|A|1637
9SYR|1|S1|G|1638

Current chains

Chain S1

18S rRNA

Nearby chains

Chain SC

40S ribosomal protein S5

Chain Sd

Small ribosomal subunit protein uS13

Chain Si

Small ribosomal subunit protein eS19

Chain Sm

40S ribosomal protein S25