J3_9T0Y_029

3D structure

PDB id

9T0Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-9 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

9T0Y|1|a|A|2198

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T0Y_029 not in the Motif Atlas

Homologous match to J3_7A0S_009

Geometric discrepancy: 0.2107

The information below is about J3_7A0S_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_17460.1

Basepair signature

cWW-tHH-cWW-F-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9T0Y|1|a|C|2091
9T0Y|1|a|U|2092
9T0Y|1|a|G|2093
*
9T0Y|1|a|C|2196
9T0Y|1|a|U|2197
9T0Y|1|a|A|2198
9T0Y|1|a|A|2199
9T0Y|1|a|C|2200
*
9T0Y|1|a|G|2223
9T0Y|1|a|G|2224
9T0Y|1|a|A|2225
9T0Y|1|a|C|2226
9T0Y|1|a|A|2227
9T0Y|1|a|G|2228

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28