J3_9T0Z_009
3D structure
- PDB id
- 9T0Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- HPFcold Bound Hibernating C. burnetii 30S Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.87 Å
Loop
- Sequence
- UUUAAUUC*GAAAAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9T0Z|1|A|A|971, 9T0Z|1|A|A|972, 9T0Z|1|A|A|974
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T0Z_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0565
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9T0Z|1|A|U|951
9T0Z|1|A|U|952
9T0Z|1|A|U|953
9T0Z|1|A|A|954
9T0Z|1|A|A|955
9T0Z|1|A|U|956
9T0Z|1|A|U|957
9T0Z|1|A|C|958
*
9T0Z|1|A|G|969
9T0Z|1|A|A|970
9T0Z|1|A|A|971
9T0Z|1|A|A|972
9T0Z|1|A|A|973
9T0Z|1|A|A|974
9T0Z|1|A|C|975
9T0Z|1|A|C|976
9T0Z|1|A|U|977
9T0Z|1|A|U|978
9T0Z|1|A|A|979
9T0Z|1|A|C|980
*
9T0Z|1|A|G|1218
9T0Z|1|A|G|1219
9T0Z|1|A|C|1220
9T0Z|1|A|U|1221
9T0Z|1|A|A|1222
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Ribosome hibernation promoting factor
- Chain J
- Small ribosomal subunit protein uS10
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14
- Chain S
- Small ribosomal subunit protein uS19
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