J3_9T4R_004
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CGG*CUUGA*UGACG
- Length
- 13 nucleotides
- Bulged bases
- 9T4R|1|A|U|661
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_004 not in the Motif Atlas
- Homologous match to J3_6CZR_077
- Geometric discrepancy: 0.1558
- The information below is about J3_6CZR_077
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17385.3
- Basepair signature
- cWW-F-cWW-cWW-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
9T4R|1|A|C|594
9T4R|1|A|G|595
9T4R|1|A|G|596
*
9T4R|1|A|C|659
9T4R|1|A|U|660
9T4R|1|A|U|661
9T4R|1|A|G|662
9T4R|1|A|A|663
*
9T4R|1|A|U|759
9T4R|1|A|G|760
9T4R|1|A|A|761
9T4R|1|A|C|762
9T4R|1|A|G|763
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain H
- Small ribosomal subunit protein uS8
- Chain L
- Small ribosomal subunit protein uS12
- Chain O
- Small ribosomal subunit protein uS15
- Chain Q
- Small ribosomal subunit protein uS17
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