J3_9T4R_009
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UUUAAUUC*GAAGAACCUUAC*GGCUA
- Length
- 25 nucleotides
- Bulged bases
- 9T4R|1|A|A|984, 9T4R|1|A|G|985, 9T4R|1|A|A|987
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_009 not in the Motif Atlas
- Geometric match to J3_8B0X_007
- Geometric discrepancy: 0.0545
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.2
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9T4R|1|A|U|964
9T4R|1|A|U|965
9T4R|1|A|U|966
9T4R|1|A|A|967
9T4R|1|A|A|968
9T4R|1|A|U|969
9T4R|1|A|U|970
9T4R|1|A|C|971
*
9T4R|1|A|G|982
9T4R|1|A|A|983
9T4R|1|A|A|984
9T4R|1|A|G|985
9T4R|1|A|A|986
9T4R|1|A|A|987
9T4R|1|A|C|988
9T4R|1|A|C|989
9T4R|1|A|U|990
9T4R|1|A|U|991
9T4R|1|A|A|992
9T4R|1|A|C|993
*
9T4R|1|A|G|1231
9T4R|1|A|G|1232
9T4R|1|A|C|1233
9T4R|1|A|U|1234
9T4R|1|A|A|1235
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain M
- Small ribosomal subunit protein uS13
- Chain N
- Small ribosomal subunit protein uS14B
- Chain S
- Small ribosomal subunit protein uS19
- Chain j
- Small ribosomal subunit protein uS10
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