J3_9T4R_014

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

UG*UGUU*GCAA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_014 not in the Motif Atlas

Homologous match to J3_6CZR_079

Geometric discrepancy: 0.1717

The information below is about J3_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89145.1

Basepair signature

cWW-tSS-F-cWW-F-cWW-F

Number of instances in this motif group

2

Unit IDs

9T4R|1|A|U|1084
9T4R|1|A|G|1085
*
9T4R|1|A|U|1094
9T4R|1|A|G|1095
9T4R|1|A|U|1096
9T4R|1|A|U|1097
*
9T4R|1|A|G|1110
9T4R|1|A|C|1111
9T4R|1|A|A|1112
9T4R|1|A|A|1113

Current chains

Chain A

16S rRNA

Nearby chains

Chain B

Small ribosomal subunit protein uS2

Chain E

Small ribosomal subunit protein uS5