J3_9T4R_016
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UAA*UGACUGC*GAGGAAGGUG
- Length
- 20 nucleotides
- Bulged bases
- 9T4R|1|A|U|1193
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_016 not in the Motif Atlas
- Homologous match to J3_6CZR_025
- Geometric discrepancy: 0.1963
- The information below is about J3_6CZR_025
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17791.1
- Basepair signature
- cWW-cSH-cWW-cWH-tWH-tSW-cWW-tWS-F-cWW-cWW-F
- Number of instances in this motif group
- 3
Unit IDs
9T4R|1|A|U|1127
9T4R|1|A|A|1128
9T4R|1|A|A|1129
*
9T4R|1|A|U|1165
9T4R|1|A|G|1166
9T4R|1|A|A|1167
9T4R|1|A|C|1168
9T4R|1|A|U|1169
9T4R|1|A|G|1170
9T4R|1|A|C|1171
*
9T4R|1|A|G|1185
9T4R|1|A|A|1186
9T4R|1|A|G|1187
9T4R|1|A|G|1188
9T4R|1|A|A|1189
9T4R|1|A|A|1190
9T4R|1|A|G|1191
9T4R|1|A|G|1192
9T4R|1|A|U|1193
9T4R|1|A|G|1194
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain B
- Small ribosomal subunit protein uS2
- Chain G
- Small ribosomal subunit protein uS7
- Chain I
- Small ribosomal subunit protein uS9
- Chain N
- Small ribosomal subunit protein uS14B
- Chain j
- Small ribosomal subunit protein uS10
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