J3_9T4R_017
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- CAAUG*CUCAGUUC*GCUG
- Length
- 17 nucleotides
- Bulged bases
- 9T4R|1|A|U|1250, 9T4R|1|A|U|1312
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_017 not in the Motif Atlas
- Homologous match to J3_6CZR_026
- Geometric discrepancy: 0.2473
- The information below is about J3_6CZR_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.5
- Basepair signature
- cWW-cSS-tHW-F-F-F-cWW-cWW-cSH-cSH-F
- Number of instances in this motif group
- 5
Unit IDs
9T4R|1|A|C|1247
9T4R|1|A|A|1248
9T4R|1|A|A|1249
9T4R|1|A|U|1250
9T4R|1|A|G|1251
*
9T4R|1|A|C|1306
9T4R|1|A|U|1307
9T4R|1|A|C|1308
9T4R|1|A|A|1309
9T4R|1|A|G|1310
9T4R|1|A|U|1311
9T4R|1|A|U|1312
9T4R|1|A|C|1313
*
9T4R|1|A|G|1344
9T4R|1|A|C|1345
9T4R|1|A|U|1346
9T4R|1|A|G|1347
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain M
- Small ribosomal subunit protein uS13
Coloring options: