J3_9T4R_018

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_018 not in the Motif Atlas

Geometric match to J3_8GLP_025

Geometric discrepancy: 0.0498

The information below is about J3_8GLP_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.2

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9T4R|1|a|G|30
9T4R|1|a|C|31
*
9T4R|1|a|G|520
9T4R|1|a|U|521
9T4R|1|a|G|522
9T4R|1|a|A|523
9T4R|1|a|A|524
9T4R|1|a|A|525
9T4R|1|a|A|526
9T4R|1|a|G|527
*
9T4R|1|a|C|554
9T4R|1|a|C|555

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20

Chain t

Large ribosomal subunit protein uL24