J3_9T4R_022

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAAAC*GGGUUGUA*UG

Length

15 nucleotides

Bulged bases

9T4R|1|a|U|301

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_022 not in the Motif Atlas

Homologous match to J3_7A0S_003

Geometric discrepancy: 0.2405

The information below is about J3_7A0S_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_97971.2

Basepair signature

cWW-F-F-tSH-cSH-tWH-tWS-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9T4R|1|a|C|272
9T4R|1|a|A|273
9T4R|1|a|A|274
9T4R|1|a|A|275
9T4R|1|a|C|276
*
9T4R|1|a|G|295
9T4R|1|a|G|296
9T4R|1|a|G|297
9T4R|1|a|U|298
9T4R|1|a|U|299
9T4R|1|a|G|300
9T4R|1|a|U|301
9T4R|1|a|A|302
*
9T4R|1|a|U|415
9T4R|1|a|G|416

Current chains

Chain a

23S rRNA

Nearby chains