J3_9T4R_025

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_025 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1012

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9T4R|1|a|C|743
9T4R|1|a|A|744
9T4R|1|a|G|745
*
9T4R|1|a|C|777
9T4R|1|a|G|778
9T4R|1|a|A|779
9T4R|1|a|A|780
9T4R|1|a|C|781
*
9T4R|1|a|G|805
9T4R|1|a|A|806
9T4R|1|a|U|807
9T4R|1|a|G|808

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2