J3_9T4R_026

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CGAUUG*CAA*UAAG

Length

13 nucleotides

Bulged bases

9T4R|1|a|U|1339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_026 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1879

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9T4R|1|a|C|1335
9T4R|1|a|G|1336
9T4R|1|a|A|1337
9T4R|1|a|U|1338
9T4R|1|a|U|1339
9T4R|1|a|G|1340
*
9T4R|1|a|C|1667
9T4R|1|a|A|1668
9T4R|1|a|A|1669
*
9T4R|1|a|U|1681
9T4R|1|a|A|1682
9T4R|1|a|A|1683
9T4R|1|a|G|1684

Current chains

Chain a

23S rRNA

Nearby chains