J3_9T4R_027

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

CUAAG*CGCAAAC*GUAG

Length

16 nucleotides

Bulged bases

9T4R|1|a|A|1651

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_027 not in the Motif Atlas

Geometric match to J3_4WF9_005

Geometric discrepancy: 0.0655

The information below is about J3_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68164.1

Basepair signature

cWW-tSH-F-F-tHW-F-F-cWW-cWW-F

Number of instances in this motif group

1

Unit IDs

9T4R|1|a|C|1342
9T4R|1|a|U|1343
9T4R|1|a|A|1344
9T4R|1|a|A|1345
9T4R|1|a|G|1346
*
9T4R|1|a|C|1647
9T4R|1|a|G|1648
9T4R|1|a|C|1649
9T4R|1|a|A|1650
9T4R|1|a|A|1651
9T4R|1|a|A|1652
9T4R|1|a|C|1653
*
9T4R|1|a|G|1662
9T4R|1|a|U|1663
9T4R|1|a|A|1664
9T4R|1|a|G|1665

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34