J3_9T4R_029

3D structure

PDB id

9T4R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S initiation complex with a natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GGGACG*CC*GAAAAGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9T4R_029 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.0933

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9T4R|1|a|G|1468
9T4R|1|a|G|1469
9T4R|1|a|G|1470
9T4R|1|a|A|1471
9T4R|1|a|C|1472
9T4R|1|a|G|1473
*
9T4R|1|a|C|1609
9T4R|1|a|C|1610
*
9T4R|1|a|G|1613
9T4R|1|a|A|1614
9T4R|1|a|A|1615
9T4R|1|a|A|1616
9T4R|1|a|A|1617
9T4R|1|a|G|1618
9T4R|1|a|C|1619

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2