J3_9T4R_031
3D structure
- PDB id
- 9T4R (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S initiation complex with a natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- GCU*ACUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9T4R|1|a|A|2413, 9T4R|1|a|U|2415, 9T4R|1|a|A|2451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9T4R_031 not in the Motif Atlas
- Homologous match to J3_7A0S_020
- Geometric discrepancy: 0.1765
- The information below is about J3_7A0S_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.2
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9T4R|1|a|G|2307
9T4R|1|a|C|2308
9T4R|1|a|U|2309
*
9T4R|1|a|A|2409
9T4R|1|a|C|2410
9T4R|1|a|U|2411
9T4R|1|a|U|2412
9T4R|1|a|A|2413
9T4R|1|a|G|2414
9T4R|1|a|U|2415
9T4R|1|a|G|2416
9T4R|1|a|A|2417
9T4R|1|a|U|2418
9T4R|1|a|C|2419
9T4R|1|a|C|2420
*
9T4R|1|a|G|2446
9T4R|1|a|C|2447
9T4R|1|a|U|2448
9T4R|1|a|C|2449
9T4R|1|a|A|2450
9T4R|1|a|A|2451
9T4R|1|a|C|2452
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 0
- Large ribosomal subunit protein bL33B
- Chain 2
- Large ribosomal subunit protein bL35
- Chain k
- Large ribosomal subunit protein uL15
- Chain v
- Large ribosomal subunit protein bL27
Coloring options: