J3_9TEZ_016

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CAUC*GUA*UUUAAAG

Length

14 nucleotides

Bulged bases

9TEZ|1|V|A|2518

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TEZ_016 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1632

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9TEZ|1|V|C|2517
9TEZ|1|V|A|2518
9TEZ|1|V|U|2519
9TEZ|1|V|C|2520
*
9TEZ|1|V|G|2545
9TEZ|1|V|U|2546
9TEZ|1|V|A|2547
*
9TEZ|1|V|U|2561
9TEZ|1|V|U|2562
9TEZ|1|V|U|2563
9TEZ|1|V|A|2564
9TEZ|1|V|A|2565
9TEZ|1|V|A|2566
9TEZ|1|V|G|2567

Current chains

Chain V

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain j

Large ribosomal subunit protein uL14