J3_9TI5_016

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CAUC*GUU*AUUAAAG

Length

14 nucleotides

Bulged bases

9TI5|1|A|A|2545, 9TI5|1|A|U|2546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TI5_016 not in the Motif Atlas

Homologous match to J3_7A0S_011

Geometric discrepancy: 0.1088

The information below is about J3_7A0S_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32601.6

Basepair signature

cWW-cWH-cWW-tWH-tSS-F-cWW-F

Number of instances in this motif group

4

Unit IDs

9TI5|1|A|C|2544
9TI5|1|A|A|2545
9TI5|1|A|U|2546
9TI5|1|A|C|2547
*
9TI5|1|A|G|2572
9TI5|1|A|U|2573
9TI5|1|A|U|2574
*
9TI5|1|A|A|2588
9TI5|1|A|U|2589
9TI5|1|A|U|2590
9TI5|1|A|A|2591
9TI5|1|A|A|2592
9TI5|1|A|A|2593
9TI5|1|A|G|2594

Current chains

Chain A

23S rRNA

Nearby chains

Chain N

50S ribosomal protein L14