J3_9TI6_025
3D structure
- PDB id
- 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- CUAA*UGCAG*CAUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9TI6|1|a|U|880, 9TI6|1|a|A|882
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TI6_025 not in the Motif Atlas
- Homologous match to J3_6CZR_018
- Geometric discrepancy: 0.2008
- The information below is about J3_6CZR_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85054.3
- Basepair signature
- cWW-tSH-F-tWW-tHS-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9TI6|1|a|C|834
9TI6|1|a|U|835
9TI6|1|a|A|836
9TI6|1|a|A|837
*
9TI6|1|a|U|866
9TI6|1|a|G|867
9TI6|1|a|C|868
9TI6|1|a|A|869
9TI6|1|a|G|870
*
9TI6|1|a|C|877
9TI6|1|a|A|878
9TI6|1|a|U|879
9TI6|1|a|U|880
9TI6|1|a|A|881
9TI6|1|a|A|882
9TI6|1|a|G|883
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- mRNA
- Chain c
- 30S ribosomal protein S2
- Chain i
- 30S ribosomal protein S8
Coloring options: