J3_9TZ5_004
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- AC*GAUAAGC*GAUUU
- Length
- 14 nucleotides
- Bulged bases
- 9TZ5|1|a|U|80, 9TZ5|1|a|A|82
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ5_004 not in the Motif Atlas
- Homologous match to J3_7A0S_002
- Geometric discrepancy: 0.1206
- The information below is about J3_7A0S_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01004.2
- Basepair signature
- cWW-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 11
Unit IDs
9TZ5|1|a|A|64
9TZ5|1|a|C|65
*
9TZ5|1|a|G|78
9TZ5|1|a|A|79
9TZ5|1|a|U|80
9TZ5|1|a|A|81
9TZ5|1|a|A|82
9TZ5|1|a|G|83
9TZ5|1|a|C|84
*
9TZ5|1|a|G|118
9TZ5|1|a|A|119
9TZ5|1|a|U|120
9TZ5|1|a|U|121
9TZ5|1|a|U|122
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 7
- Large ribosomal subunit protein uL23
- Chain r
- Large ribosomal subunit protein uL29
- Chain y
- Large ribosomal subunit protein bL34
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