J3_9TZ5_008

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TZ5_008 not in the Motif Atlas

Homologous match to J3_7A0S_005

Geometric discrepancy: 0.1138

The information below is about J3_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.2

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

10

Unit IDs

9TZ5|1|a|C|705
9TZ5|1|a|A|706
9TZ5|1|a|G|707
*
9TZ5|1|a|C|739
9TZ5|1|a|G|740
9TZ5|1|a|A|741
9TZ5|1|a|A|742
9TZ5|1|a|C|743
*
9TZ5|1|a|G|767
9TZ5|1|a|A|768
9TZ5|1|a|U|769
9TZ5|1|a|G|770

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2