J3_9TZ5_009

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAAAG*CAG*CAAG

Length

13 nucleotides

Bulged bases

9TZ5|1|a|A|1312

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TZ5_009 not in the Motif Atlas

Homologous match to J3_7A0S_006

Geometric discrepancy: 0.1551

The information below is about J3_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_32852.7

Basepair signature

cWW-tSH-F-F-F-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

9TZ5|1|a|C|1308
9TZ5|1|a|G|1309
9TZ5|1|a|A|1310
9TZ5|1|a|A|1311
9TZ5|1|a|A|1312
9TZ5|1|a|G|1313
*
9TZ5|1|a|C|1640
9TZ5|1|a|A|1641
9TZ5|1|a|G|1642
*
9TZ5|1|a|C|1654
9TZ5|1|a|A|1655
9TZ5|1|a|A|1656
9TZ5|1|a|G|1657

Current chains

Chain a

23S ribosomal RNA

Nearby chains