J3_9TZ5_012

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

AGGACG*CC*GAAAAGU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9TZ5_012 not in the Motif Atlas

Homologous match to J3_7A0S_019

Geometric discrepancy: 0.1143

The information below is about J3_7A0S_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_34864.3

Basepair signature

cWW-tSH-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9TZ5|1|a|A|1434
9TZ5|1|a|G|1435
9TZ5|1|a|G|1436
9TZ5|1|a|A|1437
9TZ5|1|a|C|1438
9TZ5|1|a|G|1439
*
9TZ5|1|a|C|1579
9TZ5|1|a|C|1580
*
9TZ5|1|a|G|1583
9TZ5|1|a|A|1584
9TZ5|1|a|A|1585
9TZ5|1|a|A|1586
9TZ5|1|a|A|1587
9TZ5|1|a|G|1588
9TZ5|1|a|U|1589

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain o

Large ribosomal subunit protein uL2