J3_9TZ9_010
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UAAG*UAUAAAC*GUG
- Length
- 14 nucleotides
- Bulged bases
- 9TZ9|1|a|U|1622, 9TZ9|1|a|A|1624, 9TZ9|1|a|A|1625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9TZ9_010 not in the Motif Atlas
- Homologous match to J3_7A0S_007
- Geometric discrepancy: 0.2275
- The information below is about J3_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47341.1
- Basepair signature
- cWW-tHH-F-tHW-tHS-tWW-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
9TZ9|1|a|U|1316
9TZ9|1|a|A|1317
9TZ9|1|a|A|1318
9TZ9|1|a|G|1319
*
9TZ9|1|a|U|1620
9TZ9|1|a|A|1621
9TZ9|1|a|U|1622
9TZ9|1|a|A|1623
9TZ9|1|a|A|1624
9TZ9|1|a|A|1625
9TZ9|1|a|C|1626
*
9TZ9|1|a|G|1635
9TZ9|1|a|U|1636
9TZ9|1|a|G|1637
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain y
- Large ribosomal subunit protein bL34
Coloring options: